Projects per year
Personal profile
Research expertise
Pieter Monsieurs obtained his Master degree of Bioscience Engineering (specialization Cellular and Genetic Engineering) at the K.U. Leuven in 2002. He obtained his PhD in Bioinformatics at the faculty of Applied Sciences of the K.U. Leuven in 2006, focussing on the deciphering of the regulatory network underlying Salmonella typhimurium infections. After a one-year post-doc in the Centre of Microbial and Plant Genetics, he started as bioinformatician at the Belgian Nuclear Research Center (SCK-CEN), where he was leading the computational biology research for 10 years, thereby collaborating with different research unit working on microbiology, radiobiology and ecology. During this period, he obtained a wide expertise in different omics technologies, including metagenomics, genomics and transcriptomics. After a one-year stay as a data scientist at the Flemish Institute for Technological Research (VITO), he started in October 2019 as senior scientist Computational Biology at the Institute of Tropical Medicine, where is affiliated with the three units studying protozoan pathogens i.e. the Trypanosoma unit led by Prof. J. Van Den Abbeele, the Unit of Malariogoy led by Prof. Anna Rosanas-Urgell, and the Unit of Molecular Parasitology led by Prof. JC Dujardin. He gained expertise in single-cell genomics and transcriptomics, and population genomics.
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Collaborations and top research areas from the last five years
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Exploring the non-coding RNA in tsetse fly saliva and its effect on the host innate immune response and trypanosome development at the host skin bite site.
Odhiambo, P. O., Van Den Abbeele, J., Monsieurs, P., Dujardin, J. & Masiga, D.
1/01/24 → …
Project: PhD-project
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AIM-CL: Antimicrobial adjuvants to revert the Imbalance of skin Microbiota for improved outcomes of Cutaneous Leishmaniasis treatment in Ethiopia
van Griensven, J., Pareyn, M., Monsieurs, P., van Henten, S., Van Herrewege, Y., Van Herrewege, Y., van Henten, S., Monsieurs, P. & Pareyn, M.
Flemish Government - Department of Economy, Science & Innovation
1/01/23 → 31/12/26
Project: Research Project
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FA5 RD CONGO: Strengthen research and education capacities in the partner institutes (INRB, CRSK, ESP) in DRC (Outcome 1) Support to interruption of transmission of Human African Trypanosomiasis (HAT) by 2030 (Outcome 2)
Verlé, P., Nicco, E., Van Cauwenberg, I., Rosanas-Urgell, A., Mutsaers, M., de Jong, B., Van Den Abbeele, J., Dermauw, V., Ariën, K., Hauner, A., Monsieurs, P., Van Bortel, W., Van Den Abbeele, J., Van Den Abbeele, J., Kreppel, K., Vanlerberghe, V., Ingelbeen, B., Lepore, L., Inocêncio da Luz, R., Semaan, A., Seghers, C., Polman, K., Katsuva, D., Colombe, S., Benova, L. & Meudec, M.
Directorate-General for Development Cooperation and Humanitarian Aid
1/01/22 → 31/12/26
Project: Development project
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LEISHCHROMAQ: Investigating the role of chromatin accessibility in the global transcription regulation in Leishmania quiescent cellusing multiomic single cell approaches
Domagalska, M., Dujardin, J., Monsieurs, P. & Stas, M.
Flemish Government - Department of Economy, Science & Innovation
1/12/21 → 31/01/23
Project: Research Project
Research output
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Evaluation of whole genome amplification and bioinformatic methods for the characterization of Leishmania genomes at a single cell level
Imamura, H., Monsieurs, P., Jara, M., Sanders, M., Maes, I., Vanaerschot, M., Berriman, M., Cotton, J. A., Dujardin, J-C. & Domagalska, M. A., 2020, In: Scientific Reports. 10, 1, 13 p., 15043.Research output: Contribution to journal › A1: Web of Science-article › peer-review
Open AccessFile78 Downloads (Pure) -
PaSiT: a novel approach based on short-oligonucleotide frequencies for efficient bacterial identification and typing
Goussarov, G., Cleenwerck, I., Mysara, M., Leys, N., Monsieurs, P., Tahon, G., Carlier, A., Vandamme, P. & Van Houdt, R., 2020, In: Bioinformatics. 36, 8, p. 2337-2344 8 p.Research output: Contribution to journal › A1: Web of Science-article › peer-review
Open AccessFile41 Downloads (Pure) -
From reads to operational taxonomic units: an ensemble processing pipeline for MiSeq amplicon sequencing data
Mysara, M., Njima, M., Leys, N., Raes, J. & Monsieurs, P., 1-Feb-2017, In: GigaScience. 6, 2, p. 1-10 10 p.Research output: Contribution to journal › A1: Web of Science-article › peer-review
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NoDe: a fast error-correction algorithm for pyrosequencing amplicon reads
Mysara, M., Leys, N., Raes, J. & Monsieurs, P., 2015, In: Bioinformatics. 16, p. 88Research output: Contribution to journal › A1: Web of Science-article › peer-review
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Reconciliation between operational taxonomic units and species boundaries
Mysara, M., Vandamme, P., Props, R., Kerckhof, F-M., Leys, N., Boon, N., Raes, J. & Monsieurs, P., 1-Apr-2017, In: FEMS Microbiology Ecology. 93, 4Research output: Contribution to journal › A1: Web of Science-article › peer-review