Projects per year
Personal profile
Research expertise
Pieter Monsieurs obtained his Master degree of Bioscience Engineering (specialization Cellular and Genetic Engineering) at the K.U. Leuven in 2002. He obtained his PhD in Bioinformatics at the faculty of Applied Sciences of the K.U. Leuven in 2006, focussing on the deciphering of the regulatory network underlying Salmonella typhimurium infections. After a one-year post-doc in the Centre of Microbial and Plant Genetics, he started as bioinformatician at the Belgian Nuclear Research Center (SCK-CEN), where he was leading the computational biology research for 10 years, thereby collaborating with different research unit working on microbiology, radiobiology and ecology. During this period, he obtained a wide expertise in different omics technologies, including metagenomics, genomics and transcriptomics. After a one-year stay as a data scientist at the Flemish Institute for Technological Research (VITO), he started in October 2019 as senior scientist Computational Biology at the Institute of Tropical Medicine, where is affiliated with the four units studying protozoan pathogens i.e. Unit of Veterinary Protozoology led by Prof. J. Van Den Abbeele, the Unit of Malariogoy led by Prof. Anna Rosanas-Urgell, the Unit of Molecular Parasitology led by Prof. JC Dujardin, and the Diagnostic Parasitology led by Philippe Büscher.
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Projects
- 4 Active
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MAD-LEI: Aneuploidy and mosaicism: a strategy for early adaptation todrug pressure in Leishmania
Dujardin, J., Domagalska, M., Imamura, H., Van den Broeck, F., Monsieurs, P. & Stas, M.
Flemish Government - Department of Economy, Science & Innovation
1/10/18 → 31/12/23
Project: Research Project
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PERU - FA4: To strengthen the R&D capacities of the Institute of Tropical Medicine Alexander von Humboldt (Peru) to deliver strategies and/or tools for diagnosis, surveillance and control of infectious diseases.
Dujardin, J., Rosanas-Urgell, A., de Jong, B., Ariën, K., Van der Auwera, G., Rigouts, L., Heyndrickx, L., Kattenberg, J. H., Battaglioli, T. C. E., Jacobs, J., Monsieurs, P. & Guetens, P.
1/11/17 → 31/12/21
Project: Development project
Research output
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Evaluation of whole genome amplification and bioinformatic methods for the characterization of Leishmania genomes at a single cell level
Imamura, H., Monsieurs, P., Jara, M., Sanders, M., Maes, I., Vanaerschot, M., Berriman, M., Cotton, J. A., Dujardin, J-C. & Domagalska, M. A., 2020, In : Scientific Reports. 10, 1, p. 15043Research output: Contribution to journal › A1: Web of Science-article
Open AccessFile6 Downloads (Pure) -
PaSiT: a novel approach based on short-oligonucleotide frequencies for efficient bacterial identification and typing
Goussarov, G., Cleenwerck, I., Mysara, M., Leys, N., Monsieurs, P., Tahon, G., Carlier, A., Vandamme, P. & Van Houdt, R., 2020, In : Bioinformatics. 36, 8, p. 2337-2344 8 p.Research output: Contribution to journal › A1: Web of Science-article
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From reads to operational taxonomic units: an ensemble processing pipeline for MiSeq amplicon sequencing data
Mysara, M., Njima, M., Leys, N., Raes, J. & Monsieurs, P., 1-Feb-2017, In : GigaScience. 6, 2, p. 1-10 10 p.Research output: Contribution to journal › A1: Web of Science-article
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NoDe: a fast error-correction algorithm for pyrosequencing amplicon reads
Mysara, M., Leys, N., Raes, J. & Monsieurs, P., 2015, In : Bioinformatics. 16, p. 88Research output: Contribution to journal › A1: Web of Science-article
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Reconciliation between operational taxonomic units and species boundaries
Mysara, M., Vandamme, P., Props, R., Kerckhof, F-M., Leys, N., Boon, N., Raes, J. & Monsieurs, P., 1-Apr-2017, In : FEMS Microbiology Ecology. 93, 4Research output: Contribution to journal › A1: Web of Science-article