Co-expression for Genotype-Phenotype Function Annotation in Potato Research

Research output: Contribution to journalArticle

Abstract

Here we will show a recipe for running the online version of CoExpNetViz, which is available as a Cytoscape plug-in, and as a web tool. After choosing bait genes and transcriptome datasets in the Cytoscape plug-in, the analysis is run and the resulting network is displayed immediately. Using the web tool, the user can download the Cytoscape files and import them manually into the program.The easiest way to calculate correlations for your data is to use graphical interface online version of CoExpNetViz for the comparative co-expression construction; see http://bioinformatics.psb.ugent.be/webtools/coexpr/index.php .By providing a user-friendly web interface, CoExpNetViz makes comparative transcriptomics analysis accessible to plant researchers without specialized bioinformatics knowledge or programming skills.

Original languageEnglish
JournalMethods in Molecular Biology
Volume2354
Pages (from-to)261-272
Number of pages12
ISSN1064-3745
DOIs
Publication statusPublished - 2016

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