TY - JOUR
T1 - Co-expression for genotype-phenotype punction annotation in potato research
AU - Tzfadia, Oren
N1 - © 2021. Springer Science+Business Media, LLC, part of Springer Nature.
PY - 2016
Y1 - 2016
N2 - Here we will show a recipe for running the online version of CoExpNetViz, which is available as a Cytoscape plug-in, and as a web tool. After choosing bait genes and transcriptome datasets in the Cytoscape plug-in, the analysis is run and the resulting network is displayed immediately. Using the web tool, the user can download the Cytoscape files and import them manually into the program.The easiest way to calculate correlations for your data is to use graphical interface online version of CoExpNetViz for the comparative co-expression construction; see http://bioinformatics.psb.ugent.be/webtools/coexpr/index.php .By providing a user-friendly web interface, CoExpNetViz makes comparative transcriptomics analysis accessible to plant researchers without specialized bioinformatics knowledge or programming skills.
AB - Here we will show a recipe for running the online version of CoExpNetViz, which is available as a Cytoscape plug-in, and as a web tool. After choosing bait genes and transcriptome datasets in the Cytoscape plug-in, the analysis is run and the resulting network is displayed immediately. Using the web tool, the user can download the Cytoscape files and import them manually into the program.The easiest way to calculate correlations for your data is to use graphical interface online version of CoExpNetViz for the comparative co-expression construction; see http://bioinformatics.psb.ugent.be/webtools/coexpr/index.php .By providing a user-friendly web interface, CoExpNetViz makes comparative transcriptomics analysis accessible to plant researchers without specialized bioinformatics knowledge or programming skills.
U2 - 10.1007/978-1-0716-1609-3_12
DO - 10.1007/978-1-0716-1609-3_12
M3 - A1: Web of Science-article
C2 - 34448164
SN - 1064-3745
VL - 2354
SP - 261
EP - 272
JO - Methods in Molecular Biology
JF - Methods in Molecular Biology
ER -