Whole-genome sequencing confirms that Burkholderia pseudomallei multilocus sequence types common to both Cambodia and Australia are due to homoplasy

Birgit De Smet; Derek S Sarovich; Erin P Price; Mark Mayo; Vanessa Theobald; Chun Kham; Seiha Heng; Phe Thong; Matthew T G Holden; Julian Parkhill; Sharon J Peacock; Brian G Spratt; Jan A Jacobs; Peter Vandamme; Bart J Currie

doi:10.1128/JCM.02574-14

Whole-genome sequencing confirms that Burkholderia pseudomallei multilocus sequence types common to both Cambodia and Australia are due to homoplasy

Birgit De Smet
, Derek S Sarovich
, Erin P Price
, Mark Mayo
, Vanessa Theobald
, Chun Kham
, Seiha Heng
, Phe Thong
, Matthew T G Holden
, Julian Parkhill
, Sharon J Peacock
, Brian G Spratt
, Jan A Jacobs
, Peter Vandamme
, Bart J Currie

Tropical Bacteriology

Research output: Contribution to journal › A1: Peer-reviewed journal articles › peer-review

Abstract

Burkholderia pseudomallei isolates with shared multilocus sequence types (STs) have not been isolated from different continents. We identified two STs shared between Australia and Cambodia. Whole-genome analysis revealed substantial diversity within STs, correctly identified the Asian or Australian origin, and confirmed that these shared STs were due to homoplasy.

Original language	English
Journal	Journal of Clinical Microbiology
Volume	53
Issue number	1
Pages (from-to)	323-326
Number of pages	4
ISSN	0095-1137
DOIs	https://doi.org/10.1128/JCM.02574-14
Publication status	Published - 2015

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De Smet, B., Sarovich, D. S., Price, E. P., Mayo, M., Theobald, V., Kham, C., Heng, S., Thong, P., Holden, M. T. G., Parkhill, J., Peacock, S. J., Spratt, B. G., Jacobs, J. A., Vandamme, P., & Currie, B. J. (2015). Whole-genome sequencing confirms that Burkholderia pseudomallei multilocus sequence types common to both Cambodia and Australia are due to homoplasy. Journal of Clinical Microbiology, 53(1), 323-326. https://doi.org/10.1128/JCM.02574-14

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title = "Whole-genome sequencing confirms that Burkholderia pseudomallei multilocus sequence types common to both Cambodia and Australia are due to homoplasy",

abstract = "Burkholderia pseudomallei isolates with shared multilocus sequence types (STs) have not been isolated from different continents. We identified two STs shared between Australia and Cambodia. Whole-genome analysis revealed substantial diversity within STs, correctly identified the Asian or Australian origin, and confirmed that these shared STs were due to homoplasy.",

keywords = "Australia, Bacterial Typing Techniques, Burkholderia pseudomallei, Cambodia, Evolution, Molecular, Genome, Bacterial, Humans, Melioidosis, Multilocus Sequence Typing, Phylogeny",

author = "\{De Smet\}, Birgit and Sarovich, \{Derek S\} and Price, \{Erin P\} and Mark Mayo and Vanessa Theobald and Chun Kham and Seiha Heng and Phe Thong and Holden, \{Matthew T G\} and Julian Parkhill and Peacock, \{Sharon J\} and Spratt, \{Brian G\} and Jacobs, \{Jan A\} and Peter Vandamme and Currie, \{Bart J\}",

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year = "2015",

doi = "10.1128/JCM.02574-14",

language = "English",

volume = "53",

pages = "323--326",

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publisher = "American Society for Microbiology",

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De Smet, B, Sarovich, DS, Price, EP, Mayo, M, Theobald, V, Kham, C, Heng, S, Thong, P, Holden, MTG, Parkhill, J, Peacock, SJ, Spratt, BG, Jacobs, JA, Vandamme, P & Currie, BJ 2015, 'Whole-genome sequencing confirms that Burkholderia pseudomallei multilocus sequence types common to both Cambodia and Australia are due to homoplasy', Journal of Clinical Microbiology, vol. 53, no. 1, pp. 323-326. https://doi.org/10.1128/JCM.02574-14

Whole-genome sequencing confirms that Burkholderia pseudomallei multilocus sequence types common to both Cambodia and Australia are due to homoplasy. / De Smet, Birgit; Sarovich, Derek S; Price, Erin P et al.
In: Journal of Clinical Microbiology, Vol. 53, No. 1, 2015, p. 323-326.

Research output: Contribution to journal › A1: Peer-reviewed journal articles › peer-review

TY - JOUR

T1 - Whole-genome sequencing confirms that Burkholderia pseudomallei multilocus sequence types common to both Cambodia and Australia are due to homoplasy

AU - De Smet, Birgit

AU - Sarovich, Derek S

AU - Price, Erin P

AU - Mayo, Mark

AU - Theobald, Vanessa

AU - Kham, Chun

AU - Heng, Seiha

AU - Thong, Phe

AU - Holden, Matthew T G

AU - Parkhill, Julian

AU - Peacock, Sharon J

AU - Spratt, Brian G

AU - Jacobs, Jan A

AU - Vandamme, Peter

AU - Currie, Bart J

N1 - FTX

PY - 2015

Y1 - 2015

N2 - Burkholderia pseudomallei isolates with shared multilocus sequence types (STs) have not been isolated from different continents. We identified two STs shared between Australia and Cambodia. Whole-genome analysis revealed substantial diversity within STs, correctly identified the Asian or Australian origin, and confirmed that these shared STs were due to homoplasy.

AB - Burkholderia pseudomallei isolates with shared multilocus sequence types (STs) have not been isolated from different continents. We identified two STs shared between Australia and Cambodia. Whole-genome analysis revealed substantial diversity within STs, correctly identified the Asian or Australian origin, and confirmed that these shared STs were due to homoplasy.

KW - Australia

KW - Bacterial Typing Techniques

KW - Burkholderia pseudomallei

KW - Cambodia

KW - Evolution, Molecular

KW - Genome, Bacterial

KW - Humans

KW - Melioidosis

KW - Multilocus Sequence Typing

KW - Phylogeny

U2 - 10.1128/JCM.02574-14

DO - 10.1128/JCM.02574-14

M3 - A1: Peer-reviewed journal articles

C2 - 25392354

SN - 0095-1137

VL - 53

SP - 323

EP - 326

JO - Journal of Clinical Microbiology

JF - Journal of Clinical Microbiology

IS - 1

ER -

Whole-genome sequencing confirms that Burkholderia pseudomallei multilocus sequence types common to both Cambodia and Australia are due to homoplasy

Abstract

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